PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA021777-PA
Common NameOsI_21931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 420aa    MW: 41596.9 Da    PI: 6.32
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA021777-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12215260555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  BGIOSGA021777-PA 215 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260
                       99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-17208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.62E-13208264No hitNo description
PROSITE profilePS5088817.282210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-16212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA GQPPFGQGGS MSGQSFGGPA  180
ASGGTAPVTS SGGGGTAPPR QQRVRARRGQ ATDPHSIAER LRRERIAERM KSLQELVPNA  240
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAGMAPL VASMSSEGNS NGSSNGSGGK  300
ASKGGTGGEG GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL  360
ASAISSATSS ASLLSRPSIR HAGAPPQTML DAAGPTSPAA MSNGDDPRHA KADGGAGGTQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224RLRRER
2305321TGGEGGGGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059190.0AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0E0HLU50.0A0A0E0HLU5_ORYNI; Uncharacterized protein
TrEMBLB8B3I60.0B8B3I6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA021777-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-38LJRHL1-like 3